生物技术进展 ›› 2019, Vol. 9 ›› Issue (2): 178-184.DOI: 10.19586/j.2095-2341.2018.0058

• 研究论文 • 上一篇    下一篇

中华根瘤菌NP1中反硝化基因启动子分析及荧光定量PCR验证

张宇,王森,陈度宇,许雷*   

  1. 中国农业科学院研究生院, 北京 100081
  • 收稿日期:2018-04-20 出版日期:2019-03-25 发布日期:2018-12-17
  • 通讯作者: 许雷,研究员,硕士生导师,主要从事微生物基因工程研究。E-mail: acsbmb@163.com
  • 作者简介:张宇,硕士研究生,主要从事好氧反硝化菌氮代谢研究。E-mail:zhangyuyu1993@126.com。
  • 基金资助:
    中国农业科学院基本科研业务费项目(1610042018005)资助。

Promoter Analysis and Realtime-PCR Assay of Denitrifying Genes of Sinorhizobium sp. NP1

ZHANG Yu, WANG Sen, CHEN Duyu, XU Lei   

  1. Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, China
  • Received:2018-04-20 Online:2019-03-25 Published:2018-12-17

摘要: 目前,在污水脱氮过程中N2O的释放量逐年上升,造成温室效应,引起酸雨并破坏臭氧层。为了研究在反硝化过程中N2O释放的机制,利用生物信息学软件在线预测了中华根瘤菌NP1反硝化过程中4个关键酶基因的启动子信息。经预测,反硝化过程所需的4个关键酶基因的表达并非传统观念上认为的使用同一个启动子,而是4个不同的启动子。同时还发现,硝酸盐还原酶和亚硝酸盐还原酶的启动子转录活性较强,而一氧化氮还原酶和氧化亚氮还原酶的启动子则转录活性较弱。为进一步探究上述预测结果,我们利用荧光定量PCR检测中华根瘤菌NP1中以KNO3为唯一氮源培养时,反硝化4个关键酶基因转录水平上的差异,以及测量反硝化过程中产生的代谢产物含量。发现硝酸盐还原酶基因和亚硝酸盐还原酶基因的转录水平明显高于一氧化氮还原酶基因和氧化亚氮还原酶基因,在反硝化过程中确实有一定量的N2O气体积累,推测可能与不同启动子的强弱有关。因此,可通过改造操纵子等基因工程手段调节反硝化关键酶的表达,使N2O全部还原为N2后再释放到空气中,构建更加高效绿色的污水脱氮菌株,具有深远的社会意义。

关键词: 反硝化, N2O, 荧光定量PCR, 启动子, 转录活性

Abstract: At present, the release of N2O in sewage denitrification process increases year by year. Lots of N2O cause greenhouse effect, acid rain and destroying the ozone layer. In order to study the mechanism of N2O releasing during denitrification, online bioinformatics software was used to predict the promoter-related information of four  denitrifying enzyme genes of Sinorhizobium sp. NP1. It has been predicted that the gene expression of the four key enzymes required for the denitrification process do not use the same promoter, but four different promoters. Meanwhile,the promoters of nitrate reductase and nitrite reductase are strong, while promoters of nitric oxide reductase and nitrous oxide reductase are weak. In order to explore the above prediction results, we used real-time PCR to detect the difference in transcription levels of four denitrifying genes in Sinorhizobium sp. NP1 cultured with KNO3 as the sole nitrogen source. And we measured the content of metabolites produced during denitrification. It was found that the transcription levels of nitrate reductase gene and nitrite reductase gene were significantly higher than those of nitric oxide reductase gene and nitrous oxide reductase gene. And there was a lot of N2O in the denitrification process. We speculated that it may be related to the strength of different promoters. Therefore, the expression of denitrifying enzymes can be regulated by genetic engineering such as transformation of operons, which lead all N2O reduced to N2 and then released into the air. In a word, building more efficient and less polluted denitrifying bacteria has profound social ecological significance.

Key words: denitrification, N2O, real-time PCR, promoter, transcriptional activity